Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs76599385 | chr1:227318924 | A/T | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs76626554 | chr8:72546717 | C/T | 1.98E-8 | 173 | 15.77 | 12.17 | 3.17 | KM Plot |
| PAAD | rs76707032 | chr7:154695487 | G/C | 3.0E-15 | 178 | 16.03 | 12.6 | 2.82 | KM Plot |
| PAAD | rs76742911 | chr1:227509018 | G/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs76744140 | chr11:125545723 | T/C | 1.61E-5 | 177 | 15.57 | 12.93 | 3.9 | KM Plot |
| PAAD | rs76746075 | chr11:125597217 | C/A | 0.00011 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs76777007 | chr1:16805065 | G/A | 9.19E-5 | 172 | 15.33 | 15.67 | 3.9 | KM Plot |
| PAAD | rs7680878 | chr4:88344651 | A/T | 0.000105 | 172 | 15.82 | 15.57 | 7.77 | KM Plot |
| PAAD | rs76838342 | chr2:128502943 | G/C | 7.9E-10 | 178 | 15.62 | 12.6 | 2.2 | KM Plot |
| PAAD | rs7685785 | chr4:78440425 | C/T | 2.53E-5 | 178 | 15.57 | 14.63 | 3.9 | KM Plot |
| PAAD | rs76859897 | chr1:227365040 | C/A | 3.69E-5 | 177 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs76860817 | chr1:227358442 | C/T | 3.69E-5 | 177 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs76872038 | chr1:227375617 | G/A | 3.69E-5 | 177 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs76897971 | chr1:227328388 | G/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs76973702 | chr2:217895374 | T/C | 9.01E-5 | 177 | 16.07 | 14.6 | 7.2 | KM Plot |